Version 5.4
Mus musculus Gene: 4921501E09Rik
Summary
InnateDB Gene IDBG-166868.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol 4921501E09Rik
Gene Name RIKEN cDNA 4921501E09 gene
Synonyms PHF8
Species Mus musculus
Ensembl Gene ENSMUSG00000023350
Encoded Proteins
IDBP-166870
RIKEN cDNA 4921501E09 gene
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 17:33064143-33068058
Strand Reverse strand
Band B1
Transcripts
ENSMUST00000024121 ENSMUSP00000024121
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
Gene Ontology

Molecular Function
Accession GO Term
GO:0003682 chromatin binding
GO:0005506 iron ion binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0032452 histone demethylase activity
GO:0032454 histone demethylase activity (H3-K9 specific)
GO:0035064 methylated histone binding
GO:0035575 histone demethylase activity (H4-K20 specific)
GO:0051864 histone demethylase activity (H3-K36 specific)
GO:0071558 histone demethylase activity (H3-K27 specific)
Biological Process
GO:0000082 G1/S transition of mitotic cell cycle
GO:0006351 transcription, DNA-templated
GO:0007420 brain development
GO:0033169 histone H3-K9 demethylation
GO:0035574 histone H4-K20 demethylation
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045943 positive regulation of transcription from RNA polymerase I promoter
GO:0055114 oxidation-reduction process
GO:0061188 negative regulation of chromatin silencing at rDNA
GO:0070544 histone H3-K36 demethylation
GO:0071557 histone H3-K27 demethylation
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
Orthologs
No orthologs found for this gene
Pathways
NETPATH
REACTOME
REACT_249770
Cell Cycle, Mitotic pathway
REACT_218274
Chromatin organization pathway
REACT_256030
HDMs demethylate histones pathway
REACT_188804
Cell Cycle pathway
REACT_241408
M Phase pathway
REACT_196580
Condensation of Prophase Chromosomes pathway
REACT_202766
Chromatin modifying enzymes pathway
REACT_250557
Mitotic Prophase pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q80TJ7
TrEMBL
UniProt Splice Variant
Entrez Gene 74042
UniGene Mm.84774
RefSeq NM_001009544
OMIM
CCDS CCDS28624
HPRD
IMGT
MGI ID MGI:1921292
MGI Symbol 4921501E09Rik
EMBL AF528164 AK036609 AK040943 AK040969 AK122447 AL662922 AL840642
GenPept AAO17385 BAC29505 BAC30755 BAC30763 BAC65729 CAM15464 CAM17159 CAM17161 CAM17163
RNA Seq Atlas 74042

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca